PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012403001
Common NameGSBRNA2T00012403001, LOC106377131
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 344aa    MW: 38294.9 Da    PI: 7.1395
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012403001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.64e-691132792154
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.........ks 80 
                          r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s+  ++a++kr re          +s
  GSBRNA2T00012403001 113 RQGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSATSRetQNAKAKRLREAnggdnddkdRS 202
                          7899*******************************************************9999988443334444444477777776666 PP

               DUF702  81 kkqsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                            + ++ +t+l++a+s++ +e s+ lP+evss+avfrcvrvss+++  +e+e+aYqtav+igGhvfkGiLydqGl++
  GSBRNA2T00012403001 203 GGSGSALATRLVNANSNSGFEESQnLPPEVSSPAVFRCVRVSSMENdeDEQEYAYQTAVNIGGHVFKGILYDQGLDQ 279
                          7778888999999999999987666*******************98434556**********************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-63116278IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.6E-27118160IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.5E-26228277IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAGFFYLGGR DNINNKQDHH HHVDKDHHQQ DKSNYLYLYK DEIYNTNKGF EIWPPQYFQQ  60
QQEQQQHHVT ASTNLYSFGM VPSSSNNNNN NRSRSLYFNV VSDHEPGGFS VTRQGGMNCQ  120
DCGNQAKKDC PHLRCRTCCK SRGFHCQTHV KSTWVPAAKR RERLAQLASL QHHSATSRET  180
QNAKAKRLRE ANGGDNDDKD RSGGSGSALA TRLVNANSNS GFEESQNLPP EVSSPAVFRC  240
VRVSSMENDE DEQEYAYQTA VNIGGHVFKG ILYDQGLDQD HHHQLDLLAS TATTTNAEEI  300
AAKTAVTVAA NTNNGLMIDP SSLYPSQLNS FIAGTPFFTP PRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.292010.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012403001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672765.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A078G1F00.0A0A078G1F0_BRANA; BnaC02g24360D protein
STRINGBra008203.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-157SHI-related sequence 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]